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Report for Sequence Feature Glyma19g02215

Feature Type:gene_model
Chromosome:Gm19
Start:1929739
stop:1932860
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma19g02215
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G15050AT Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein | chr5:4871820-4873454 REVERSE LENGTH=434 SoyBaseE_val: 0ISS
GO:0007020GO-bp Annotation by Michelle Graham. GO Biological Process: microtubule nucleation SoyBaseN/AISS
GO:0016051GO-bp Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0016020GO-cc Annotation by Michelle Graham. GO Cellular Compartment: membrane SoyBaseN/AISS
GO:0008375GO-mf Annotation by Michelle Graham. GO Molecular Function: acetylglucosaminyltransferase activity SoyBaseN/AISS
GO:0016757GO-mf Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups SoyBaseN/AISS
KOG0799 KOG Branching enzyme JGI ISS
PTHR19297Panther GLYCOSYLTRANSFERASE 14 FAMILY MEMBER JGI ISS
PTHR19297:SF2Panther GALACTOSYLTRANSFERASE-RELATED JGI ISS
PF02485PFAM Core-2/I-Branching enzyme JGI ISS
UniRef100_B9RUK1UniRef Annotation by Michelle Graham. Most informative UniRef hit: Acetylglucosaminyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RUK1_RICCO SoyBaseE_val: 0ISS
UniRef100_I1LWH6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1LWH6_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma19g02215
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma19g02215 not represented in the dataset
Glyma19g02215 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma19g02215
ParalogEvidenceComments
Glyma13g05020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma19g02215 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.19g018800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma19g02215
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma19g02215
>Glyma19g02215.1   sequence type=CDS   gene model=Glyma19g02215   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAAATTGAAGAACTACTACATGCACCTGCGGCACCACCACCACCACCACCACGCCGCGGCGGAGCGCAAGTGGGTGTTCCCACTCGCCATTGGCTCCCTCCTCTCCCTCTTCCTCCTCTTCCTCGCCACCCTCACCTCCCCGGAGGGAACCCCCATCCTCCCCTTCTACCGCTCCATCACCGCCGCCTCCTACTCCGTCTTCGTCGAATCCAAGCTCCGCCCCCTCCCCGGCGACGGCGCCGCCGTCACCCGCGTCCTCTTGGCCCTCTACCACCCCAACAACCGCTACGTGGTCCACCTGGACCTCGAATCCTCGCCGGAGGAACGCTCCGATCTGGTGAGGTTCGTGGAGGGCCACGCGCTGTTCAAGCGGTTCGGGAATGTGAGGGTTATAAAGAAGGCGAATCTCGTCACGTACAGGGGACCCACCATGGTCGCAAACACGCTTCACGCCGCCGCGATTCTGTTGAGGGAGCTTGGGGATTGGGACTGGTTCATCAATCTCAGCGCCTCCGATTACCCACTTGTCACACAAGATGATCTGCTGCATACGTTTTCGTACCTGCCGCGGGATCTGAATTTCATTGATCATACGAGTGACATTGGATGGAAAGATCATCAGCGTGCGAGGCCGATCATCGTTGATCCGGGTTTGTATATGAATAAGAAGCAAGATGTGTTTTGGATTACACAGAGGAGGAGTAGGCCAACGGCTTTCAAGCTTTTCACAGGTTCGGCTTGGATGGCACTGTCAAAATCTTTCATTGATTACTGCATATGGGGATGGGACAACCTACCTCGAACCGTACTCATGTACTATTCAAATTTCATATCTTCCCCTGAAGGATACTTCCACACAGTTATTTGCAATGCACAAGAGTTCAGGAACACAACTGTGAACAGTGATTTACATTTCATTTCTTGGGACAATCCTCCCAAGCAGCATCCTCACTACCTTACAGTTGATGACATGAAAGGGATGGTTGGCAGCAATGCTCCGTTTGCAAGGAAATTCCACAGAGAAGATCCAGTTTTGGATAAAATTGATGCTGAACTATTATCCAGAGGTCCTGGAATGACTGTTCCCGGAGGTTGGTGCATAGGGAAAAGGGAGAATGGCACCGATCCCTGCTCTGAAGTCGGTGATACTAACGTTCTGAGGCCTGGCCCAGGTTCCAAGAGACTTGAAACATTAATCAACTCATTGTTGTCGAATGAAAAGTTCCGGCCAAGACAGTGCATGTGA
Predicted protein sequences of Glyma19g02215
>Glyma19g02215.1   sequence type=predicted peptide   gene model=Glyma19g02215   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKLKNYYMHLRHHHHHHHAAAERKWVFPLAIGSLLSLFLLFLATLTSPEGTPILPFYRSITAASYSVFVESKLRPLPGDGAAVTRVLLALYHPNNRYVVHLDLESSPEERSDLVRFVEGHALFKRFGNVRVIKKANLVTYRGPTMVANTLHAAAILLRELGDWDWFINLSASDYPLVTQDDLLHTFSYLPRDLNFIDHTSDIGWKDHQRARPIIVDPGLYMNKKQDVFWITQRRSRPTAFKLFTGSAWMALSKSFIDYCIWGWDNLPRTVLMYYSNFISSPEGYFHTVICNAQEFRNTTVNSDLHFISWDNPPKQHPHYLTVDDMKGMVGSNAPFARKFHREDPVLDKIDAELLSRGPGMTVPGGWCIGKRENGTDPCSEVGDTNVLRPGPGSKRLETLINSLLSNEKFRPRQCM*






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